Barrierless proton transfer within short protonated peptides in the presence of water bridges. A density functional theory study

J Phys Chem B. 2011 Feb 17;115(6):1485-90. doi: 10.1021/jp107219r. Epub 2011 Jan 25.

Abstract

We have used density functional theory at the B3LYP/6-31++G(d,p) level of theory to investigate proton transfer in protonated N(2)-acetyl-N(1)-methylglycinamide and N-acetylglycyl-N(1)-methylglycinamide with multiwater assistance and to determine the structures and energies of the most important minima and transition states corresponding to the proton-transfer pathways. We propose mechanisms for proton transfer between adjacent and nonadjacent carbonyl oxygen atoms with water bridge assistance. The presence of a two-water bridge connected to the two carbonyl oxygen atoms provides a proton-transfer mechanism having such a low-barrier that the excess proton is almost freely mobile.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Glycine / analogs & derivatives
  • Glycine / chemistry
  • Models, Theoretical*
  • Oxygen / chemistry
  • Peptides / chemistry*
  • Protons*
  • Thermodynamics
  • Water / chemistry*

Substances

  • N-acetylglycyl-N'-methylglycinamide
  • Peptides
  • Protons
  • Water
  • Oxygen
  • Glycine