Sialic acid recognition of the pandemic influenza 2009 H1N1 virus: binding mechanism between human receptor and influenza hemagglutinin

Protein Pept Lett. 2011 May;18(5):530-9. doi: 10.2174/092986611794927893.

Abstract

Quantum mechanical fragment molecular orbital calculations have been performed for receptor binding of the hemagglutinin protein of the recently pandemic influenza 2009 H1N1, A/swine/Iowa/1930, and A/Puerto Rico/8/1934 viruses to α2-6 linked sialyloligosaccharides, as analogs of human receptors. The strongest receptor binding affinity was observed for the 2009/H1N1pdm. The inter-fragment interaction energy analysis revealed that the amino acid mutation of 2009/H1N1pdm, Ser145Lys, was a major cause of such strong binding affinity. Strong ionic pair interaction between the sialic acid and Lys145 was observed only in the 2009/H1N1pdm, in addition to the hydrogen bond between the sialic acid and Gln226 observed in all the HAs. Therefore, pandemic 2009/H1N1pdm has been found to recognize the α2-6 receptor much stronger than the 1930-swine and 1934-human.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Hemagglutinin Glycoproteins, Influenza Virus / metabolism*
  • Humans
  • Influenza A Virus, H1N1 Subtype / genetics
  • Influenza A Virus, H1N1 Subtype / pathogenicity*
  • Influenza, Human / genetics
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation
  • N-Acetylneuraminic Acid / metabolism*
  • Oligosaccharides / metabolism*
  • Protein Binding
  • Receptors, Virus / metabolism*
  • Virus Attachment

Substances

  • Hemagglutinin Glycoproteins, Influenza Virus
  • Oligosaccharides
  • Receptors, Virus
  • sialooligosaccharides
  • N-Acetylneuraminic Acid