Single-stranded DNA binding proteins unwind the newly synthesized double-stranded DNA of model miniforks

Biochemistry. 2011 Feb 15;50(6):932-44. doi: 10.1021/bi101583e. Epub 2011 Jan 20.

Abstract

Single-stranded DNA binding (SSB) proteins are essential proteins of DNA metabolism. We characterized the binding of the bacteriophage T4 SSB, Escherichia coli SSB, human replication protein A (hRPA), and human hSSB1 proteins onto model miniforks and double-stranded-single-stranded (ds-ss) junctions exposing 3' or 5' ssDNA overhangs. T4 SSB proteins, E. coli SSB proteins, and hRPA have a different binding preference for the ss tail exposed on model miniforks and ds-ss junctions. The T4 SSB protein preferentially binds substrates with 5' ss tails, whereas the E. coli SSB protein and hRPA show a preference for substrates with 3' ss overhangs. When interacting with ds-ss junctions or miniforks, the T4 SSB protein, E. coli SSB protein, and hRPA can destabilize not only the ds part of a ds-ss junction but also the daughter ds arm of a minifork. The T4 SSB protein displays these unwinding activities in a polar manner. Taken together, our results position the SSB protein as a potential key player in the reversal of a stalled replication fork and in gap repair-mediated repetitive sequence expansion.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • DNA / biosynthesis
  • DNA / chemistry*
  • DNA / metabolism
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / metabolism
  • Escherichia coli / metabolism
  • Humans
  • Kinetics
  • Mitochondrial Proteins
  • Models, Biological
  • Protein Binding
  • Replication Protein A / chemistry
  • Replication Protein A / metabolism

Substances

  • DNA-Binding Proteins
  • Mitochondrial Proteins
  • Replication Protein A
  • SSBP1 protein, human
  • DNA