Novosphingobium sediminicola sp. nov. isolated from freshwater sediment

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2464-2468. doi: 10.1099/ijs.0.024307-0. Epub 2010 Nov 19.

Abstract

A yellow-pigmented, Gram-negative, short rod-shaped, non-motile and non-spore-forming bacterial strain, designated HU1-AH51(T), was isolated from freshwater sediment and was characterized using a polyphasic approach, in order to determine its taxonomic position. On the basis of 16S rRNA gene sequence similarity, strain HU1-AH51(T) was shown to belong to the genus Novosphingobium, showing the highest level of sequence similarity with respect to Novosphingobium resinovorum NCIMB 8767(T) (96.0 %), Novosphingobium naphthalenivorans TUT562(T) (96.0 %) and Novosphingobium panipatense SM16(T) (96.0 %). Strain HU1-AH51(T) had a genomic DNA G+C content of 62.6 mol% and Q-10 as the predominant respiratory quinone. Furthermore, the major polyamine component (spermidine) in the cytoplasm and the presence of sphingoglycolipids suggested that strain HU1-AH51(T) belongs to the family Sphingomonadaceae. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain HU1-AH51(T) represents a novel species of the genus Novosphingobium, for which the name Novosphingobium sediminicola sp. nov. is proposed. The type strain is HU1-AH51(T) ( = LMG 24320(T) = KCTC 22311(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fresh Water / microbiology*
  • Geologic Sediments / microbiology*
  • Glycosphingolipids / analysis
  • Molecular Sequence Data
  • Phylogeny
  • Pigments, Biological / metabolism
  • Polyamines / analysis
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification*
  • Sphingomonadaceae / physiology

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Glycosphingolipids
  • Pigments, Biological
  • Polyamines
  • Quinones
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/FJ177534