Possible roles of exceptionally conserved residues around the selectivity filters of sodium and calcium channels

J Biol Chem. 2011 Jan 28;286(4):2998-3006. doi: 10.1074/jbc.M110.175406. Epub 2010 Nov 16.

Abstract

In the absence of x-ray structures of sodium and calcium channels their homology models are used to rationalize experimental data and design new experiments. A challenge is to model the outer-pore region that folds differently from potassium channels. Here we report a new model of the outer-pore region of the NaV1.4 channel, which suggests roles of highly conserved residues around the selectivity filter. The model takes from our previous study (Tikhonov, D. B., and Zhorov, B. S. (2005) Biophys. J. 88, 184-197) the general disposition of the P-helices, selectivity filter residues, and the outer carboxylates, but proposes new intra- and inter-domain contacts that support structural stability of the outer pore. Glycine residues downstream from the selectivity filter are proposed to participate in knob-into-hole contacts with the P-helices and S6s. These contacts explain the adapted tetrodotoxin resistance of snakes that feed on toxic prey through valine substitution of isoleucine in the P-helix of repeat IV. Polar residues five positions upstream from the selectivity filter residues form H-bonds with the ascending-limb backbones. Exceptionally conserved tryptophans are engaged in inter-repeat H-bonds to form a ring whose π-electrons would facilitate passage of ions from the outer carboxylates to the selectivity filter. The outer-pore model of CaV1.2 derived from the NaV1.4 model is also stabilized by the ring of exceptionally conservative tryptophans and H-bonds between the P-helices and ascending limbs. In this model, the exceptionally conserved aspartate downstream from the selectivity-filter glutamate in repeat II facilitates passage of calcium ions to the selectivity-filter ring through the tryptophan ring. Available experimental data are discussed in view of the models.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Calcium Channels, L-Type / chemistry*
  • Calcium Channels, L-Type / metabolism
  • Crystallography, X-Ray
  • Drug Resistance
  • Evolution, Molecular*
  • Humans
  • Hydrogen Bonding
  • Models, Molecular*
  • Muscle Proteins / chemistry*
  • Muscle Proteins / genetics
  • Muscle Proteins / metabolism
  • NAV1.4 Voltage-Gated Sodium Channel
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Snakes / genetics
  • Snakes / metabolism
  • Sodium Channels / chemistry*
  • Sodium Channels / genetics
  • Sodium Channels / metabolism
  • Tetrodotoxin / chemistry
  • Tetrodotoxin / genetics
  • Tetrodotoxin / metabolism

Substances

  • Calcium Channels, L-Type
  • L-type calcium channel alpha(1C)
  • Muscle Proteins
  • NAV1.4 Voltage-Gated Sodium Channel
  • SCN4A protein, human
  • Sodium Channels
  • Tetrodotoxin