Quantum-chemical study on the bioactive conformation of epothilones

J Chem Inf Model. 2010 Dec 27;50(12):2176-90. doi: 10.1021/ci1003416. Epub 2010 Nov 15.

Abstract

Herein, I report a DFT study on the bioactive conformation of epothilone A based on the analysis of 92 stable conformations of free and bound epothilone to a reduced model of tubulin receptor. The equilibrium structures and relative energies were studied using B3LYP and X3LYP functionals and the 6-31G(d) standard basis set, which was considered appropriate for the size of the systems under study. Calculated relative energies of free and bound epothilones led me to propose a new model for the bioactive conformation of epothilone A, which accounts for several structure-activity data.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Epothilones / chemistry*
  • Epothilones / metabolism
  • Gases / chemistry
  • Molecular Conformation*
  • Molecular Dynamics Simulation
  • Quantum Theory*
  • Thermodynamics
  • Tubulin / metabolism
  • Water / chemistry

Substances

  • Epothilones
  • Gases
  • Tubulin
  • Water
  • epothilone A