Mechanism of replication blocking and bypass of Y-family polymerase {eta} by bulky acetylaminofluorene DNA adducts

Proc Natl Acad Sci U S A. 2010 Nov 30;107(48):20720-5. doi: 10.1073/pnas.1008894107. Epub 2010 Nov 12.

Abstract

Heterocyclic aromatic amines produce bulky C8 guanine lesions in vivo, which interfere and disrupt DNA and RNA synthesis. These lesions are consequently strong replication blocks. In addition bulky adducts give rise to point and frameshift mutations. The translesion synthesis (TLS) DNA polymerase η is able to bypass slowly C8 bulky adduct lesions such as the widely studied 2-aminofluorene-dG and its acetylated analogue mainly in an error-free manner. Replicative polymerases are in contrast fully blocked by the acetylated lesion. Here, we show that TLS efficiency of Pol η depends critically on the size of the bulky adduct forming the lesion. Based on the crystal structure, we show why the bypass reaction is so difficult and we provide a model for the bypass reaction. In our model, TLS is accomplished without rotation of the lesion into the anti conformation as previously thought.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 2-Acetylaminofluorene / chemistry
  • 2-Acetylaminofluorene / metabolism*
  • Crystallography, X-Ray
  • DNA Adducts / chemistry
  • DNA Adducts / metabolism*
  • DNA Damage
  • DNA Replication*
  • DNA-Directed DNA Polymerase / chemistry
  • DNA-Directed DNA Polymerase / metabolism*
  • Models, Molecular
  • Molecular Conformation
  • Protein Binding
  • Saccharomyces cerevisiae / enzymology*

Substances

  • DNA Adducts
  • 2-Acetylaminofluorene
  • DNA-Directed DNA Polymerase
  • Rad30 protein

Associated data

  • PDB/2XGP
  • PDB/2XGQ