A novel bifunctional endo-/exo-type cellulase from an anaerobic ruminal bacterium

Appl Microbiol Biotechnol. 2011 Mar;89(5):1453-62. doi: 10.1007/s00253-010-2949-9. Epub 2010 Nov 3.

Abstract

An anaerobic microorganism termed AN-C16-KBRB was isolated from the bovine rumen and demonstrated cellulolytic activity on a NB agar plate containing azo-carboxymethyl cellulose. The 16S rRNA gene of the strain was 98% similar to that of Clostridiaceae bacterium SK082 (AB298754) as the highest homology. A novel celEdx16 gene encoding a bifunctional endo-/exocellulase (CelEdx16) was cloned by the shotgun method from AN-C16-KBRB, and the enzyme was characterized. The celEdx16 gene had an open reading frame of 1,104-base pairs, which encoded 367 amino acids to yield a protein of molecular mass 40.4 kDa. The amino acid sequence was 53% identical to that of an endoglucanase from Clostridium thermocellum. CelEdx16 was overexpressed in Escherichia coli and purified using Ni-NTA affinity chromatography. The specific endocellulase and exocellulase activities of CelEdx16 were 15.9 and 3.6 x 10⁻² U mg⁻¹, respectively. The Michaelis-Menten constant (K (m) values) and the maximal reaction velocities (V(max) values) of CelEdx16 were 47.1 μM and 9.6 x 10⁻³ μmole min⁻¹ when endocellulase activity was measured and 106.3 μM and 2.1 x 10⁻⁵ μmol min⁻¹ when exocellulase activity was assessed. CelEdx16 was optimally active at pH 5.0 and 40 °C.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agar
  • Amino Acid Sequence
  • Animals
  • Bacteria, Anaerobic / enzymology*
  • Bacteria, Anaerobic / genetics
  • Bacteria, Anaerobic / isolation & purification*
  • Cattle
  • Cellulase / genetics
  • Cellulase / isolation & purification*
  • Cellulase / metabolism*
  • Cellulose / metabolism
  • Chromatography, Affinity
  • Clostridium thermocellum / enzymology
  • Clostridium thermocellum / genetics
  • Cluster Analysis
  • Culture Media / chemistry
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Escherichia coli / genetics
  • Gene Expression
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Rumen / microbiology*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • Culture Media
  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Recombinant Proteins
  • Agar
  • Cellulose
  • Cellulase

Associated data

  • GENBANK/HM475108
  • GENBANK/HM804852