Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit

Science. 2010 Oct 29;330(6004):673-7. doi: 10.1126/science.1193220.

Abstract

Ribosomes are self-assembling macromolecular machines that translate DNA into proteins, and an understanding of ribosome biogenesis is central to cellular physiology. Previous studies on the Escherichia coli 30S subunit suggest that ribosome assembly occurs via multiple parallel pathways rather than through a single rate-limiting step, but little mechanistic information is known about this process. Discovery single-particle profiling (DSP), an application of time-resolved electron microscopy, was used to obtain more than 1 million snapshots of assembling 30S subunits, identify and visualize the structures of 14 assembly intermediates, and monitor the population flux of these intermediates over time. DSP results were integrated with mass spectrometry data to construct the first ribosome-assembly mechanism that incorporates binding dependencies, rate constants, and structural characterization of populated intermediates.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Image Processing, Computer-Assisted
  • Kinetics
  • Mass Spectrometry
  • Microscopy, Electron / methods
  • Models, Molecular
  • Nucleic Acid Conformation
  • Protein Binding
  • Protein Conformation
  • RNA, Bacterial / chemistry
  • RNA, Ribosomal / chemistry
  • Ribosomal Proteins / chemistry
  • Ribosomal Proteins / metabolism*
  • Ribosome Subunits, Small, Bacterial / chemistry
  • Ribosome Subunits, Small, Bacterial / metabolism*
  • Ribosome Subunits, Small, Bacterial / ultrastructure*

Substances

  • Bacterial Proteins
  • RNA, Bacterial
  • RNA, Ribosomal
  • Ribosomal Proteins