CD and MCD spectroscopic studies of the two Dps miniferritin proteins from Bacillus anthracis: role of O2 and H2O2 substrates in reactivity of the diiron catalytic centers

Biochemistry. 2010 Dec 14;49(49):10516-25. doi: 10.1021/bi101346c. Epub 2010 Nov 12.

Abstract

DNA protection during starvation (Dps) proteins are miniferritins found in bacteria and archaea that provide protection from uncontrolled Fe(II)/O radical chemistry; thus the catalytic sites are targets for antibiotics against pathogens, such as anthrax. Ferritin protein cages synthesize ferric oxymineral from Fe(II) and O(2)/H(2)O(2), which accumulates in the large central cavity; for Dps, H(2)O(2) is the more common Fe(II) oxidant contrasting with eukaryotic maxiferritins that often prefer dioxygen. To better understand the differences in the catalytic sites of maxi- versus miniferritins, we used a combination of NIR circular dichroism (CD), magnetic circular dichroism (MCD), and variable-temperature, variable-field MCD (VTVH MCD) to study Fe(II) binding to the catalytic sites of the two Bacillus anthracis miniferritins: one in which two Fe(II) react with O(2) exclusively (Dps1) and a second in which both O(2) or H(2)O(2) can react with two Fe(II) (Dps2). Both result in the formation of iron oxybiomineral. The data show a single 5- or 6-coordinate Fe(II) in the absence of oxidant; Fe(II) binding to Dps2 is 30× more stable than Dps1; and the lower limit of K(D) for binding a second Fe(II), in the absence of oxidant, is 2-3 orders of magnitude weaker than for the binding of the single Fe(II). The data fit an equilibrium model where binding of oxidant facilitates formation of the catalytic site, in sharp contrast to eukaryotic M-ferritins where the binuclear Fe(II) centers are preformed before binding of O(2). The two different binding sequences illustrate the mechanistic range possible for catalytic sites of the family of ferritins.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacillus anthracis*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Binding Sites
  • Catalytic Domain / physiology
  • Circular Dichroism* / methods
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Evolution, Molecular
  • Ferritins / chemistry
  • Ferritins / metabolism*
  • Ferrous Compounds / chemistry
  • Ferrous Compounds / metabolism
  • Hydrogen Peroxide / chemistry
  • Hydrogen Peroxide / metabolism*
  • Magnetic Resonance Spectroscopy
  • Oxidants / chemistry
  • Oxidants / metabolism
  • Oxygen / chemistry
  • Oxygen / physiology*
  • Substrate Specificity / physiology

Substances

  • Bacterial Proteins
  • DNA-Binding Proteins
  • DPS protein, Bacteria
  • Ferrous Compounds
  • Oxidants
  • Ferritins
  • Hydrogen Peroxide
  • Oxygen