[Improved weighted cross-correlation coefficient with a new kernel and its application in predicting T cell epitopes]

Nan Fang Yi Ke Da Xue Xue Bao. 2010 Oct;30(10):2252-5.
[Article in Chinese]

Abstract

We designed a weighted cross-correlation coefficient considering the "anchor" of the T cell epitopes, and used an evolutionary algorithm to search for an optimal weight vector. A SVM model with this new peptide similarity kernel was evaluated on a T-cell data set. The results demonstrated a good performance of this method.

Publication types

  • English Abstract
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Algorithms*
  • Artificial Intelligence
  • Epitopes, T-Lymphocyte*
  • Models, Statistical
  • Peptides*

Substances

  • Epitopes, T-Lymphocyte
  • Peptides