Excessive RNA splicing and inhibition of HIV-1 replication induced by modified U1 small nuclear RNAs

J Virol. 2010 Dec;84(24):12790-800. doi: 10.1128/JVI.01257-10. Epub 2010 Oct 6.

Abstract

HIV-1 RNA undergoes a complex splicing process whereby over 40 different mRNA species are produced by alternative splicing. In addition, approximately half of the RNA transcripts remain unspliced and either are used to encode Gag and Gag-Pol proteins or are packaged into virions as genomic RNA. It has previously been shown that HIV-1 splicing is regulated by cis elements that bind to cellular factors. These factors either enhance or repress definition of exons that are flanked by the HIV-1 3' splice sites. Here we report that expression of modified U1 snRNPs with increased affinity to HIV-1 downstream 5' splice sites and to sequences within the first tat coding exon act to selectively increase splicing at the upstream 3' splice sites in cotransfected 293T cells. This results in a decrease of unspliced viral RNA levels and an approximately 10-fold decrease in virus production. In addition, excessive splicing of viral RNA is concomitant with a striking reduction in the relative amounts of Gag processing intermediates and products. We also show that T cell lines expressing modified U1 snRNAs exhibit reduced HIV-1 replication. Our results suggest that induction of excessive HIV-1 RNA splicing may be a novel strategy to inhibit virus replication in human patients.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing*
  • Blotting, Northern
  • Blotting, Western
  • Cells, Cultured
  • Gene Expression Regulation, Viral
  • HIV Infections / genetics*
  • HIV Infections / virology
  • HIV-1 / physiology*
  • Humans
  • RNA Splice Sites / physiology
  • RNA, Messenger / genetics
  • RNA, Small Nuclear / genetics*
  • RNA, Viral / genetics*
  • Reverse Transcriptase Polymerase Chain Reaction
  • T-Lymphocytes / metabolism
  • T-Lymphocytes / virology
  • Virus Replication / physiology*
  • gag Gene Products, Human Immunodeficiency Virus / genetics*

Substances

  • RNA Splice Sites
  • RNA, Messenger
  • RNA, Small Nuclear
  • RNA, Viral
  • U1 small nuclear RNA
  • gag Gene Products, Human Immunodeficiency Virus