A single amino acid change of translation termination factor eRF1 switches between bipotent and omnipotent stop-codon specificity

Nucleic Acids Res. 2011 Jan;39(2):599-608. doi: 10.1093/nar/gkq759. Epub 2010 Sep 21.

Abstract

In eukaryotes a single class-1 translation termination factor eRF1 decodes the three stop codons: UAA, UAG and UGA. Some ciliates, like Euplotes, have a variant code, and here eRF1s exhibit UAR-only specificity, whereas UGA is reassigned as a sense codon. Since eukaryote eRF1 stop-codon recognition is associated with its N-terminal domain, structural features should exist in the N domain of ciliate eRF1s that restrict their stop-codon specificity. Using an in vitro reconstituted eukaryotic translation system we demonstrate here that a chimeric eRF1 composed of the N domain of Euplotes aediculatus eRF1 fused to the MC domains of human eRF1 exhibits UAR-only specificity. Functional analysis of eRF1 chimeras constructed by swapping Euplotes N domain sequences with the cognate regions from human eRF1 as well as site-directed mutagenesis of human eRF1 highlighted the crucial role of the alanine residue in position 70 of E. aediculatus eRF1 in restricting UGA decoding. Switching the UAR-only specificity of E. aediculatus eRF1 to omnipotent mode is due to a single point mutation. Furthermore, we examined the influence of eRF3 on the ability of chimeric and mutant eRF1s to induce peptide release in response to different stop codons.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Codon, Terminator*
  • Euplotes / genetics
  • Humans
  • Molecular Sequence Data
  • Peptide Chain Termination, Translational*
  • Peptide Termination Factors / chemistry*
  • Peptide Termination Factors / genetics
  • Peptide Termination Factors / metabolism
  • Point Mutation
  • Polymerase Chain Reaction
  • Protozoan Proteins / chemistry
  • Protozoan Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Sequence Alignment

Substances

  • Codon, Terminator
  • ETF1 protein, human
  • Peptide Termination Factors
  • Protozoan Proteins
  • Recombinant Fusion Proteins
  • peptide-chain-release factor 3