Identification and characterization of lipolytic enzymes from a peat-swamp forest soil metagenome

Biosci Biotechnol Biochem. 2010;74(9):1848-54. doi: 10.1271/bbb.100249. Epub 2010 Sep 7.

Abstract

In this work, a metagenomic library was generated from peat-swamp forest soil obtained from Narathiwat Province, Thailand. From a fosmid library of approximately 15,000 clones, six independent clones were found to possess lipolytic activity at acidic pH. Analysis of pyrosequencing data revealed six ORFs, which exhibited 34-71% protein similarity to known lipases/esterases. A fosmid clone, designated LP8, which demonstrated the highest level of lipolytic activity under acidic conditions and demonstrated extracellular activity, was subsequently subcloned and sequenced. The full-length lipase/esterase gene, estPS2, was identified. Its deduced amino acid was closely related to a lipolytic enzyme of an uncultured bacterium, and contained the highly conserved motif of a hormone-sensitive family IV lipase. The EstPS2 enzyme exhibited highest activity toward p-nitrophenyl butyrate (C⁴) at 37 °C at pH 5, indicating that it was an esterase with activity and secretion characteristics suitable for commercial development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Butyrates
  • Cloning, Molecular
  • Conserved Sequence
  • Esterases / genetics
  • Esterases / isolation & purification
  • Esterases / metabolism*
  • Industrial Microbiology
  • Lipase
  • Lipolysis*
  • Metagenome / genetics*
  • Sequence Analysis, DNA
  • Soil
  • Soil Microbiology*
  • Substrate Specificity
  • Thailand
  • Trees
  • Wetlands

Substances

  • Butyrates
  • Soil
  • 4-nitrophenyl butyrate
  • Esterases
  • Lipase