Structure of a stacked anthraquinone-DNA complex

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1019-22. doi: 10.1107/S1744309110030034. Epub 2010 Aug 21.

Abstract

The crystal structure of the telomeric sequence d(UBrAGG) interacting with an anthraquinone derivative has been solved by MAD. In all previously studied complexes of intercalating drugs, the drug is usually sandwiched between two DNA base pairs. Instead, the present structure looks like a crystal of stacked anthraquinone molecules in which isolated base pairs are intercalated. Unusual base pairs are present in the structure, such as G.G and A.UBr reverse Watson-Crick base pairs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anthraquinones / chemistry*
  • Crystallography, X-Ray
  • DNA / chemistry*
  • Models, Molecular
  • Molecular Conformation
  • Nucleic Acid Conformation*
  • Stereoisomerism

Substances

  • Anthraquinones
  • DNA

Associated data

  • PDB/3GDD