Conformational properties of arenicins: from the bulk to the air-water interface

Chemphyschem. 2010 Oct 25;11(15):3262-8. doi: 10.1002/cphc.201000472.

Abstract

The structures of two antimicrobial peptides (arenicin Ar-1 and its linear derivative C/S-Ar-1) are studied in different solutions and at the air-water interface using spectroscopic methods such as circular dichroism (CD) and infrared reflection absorption spectroscopy (IRRAS) as well as grazing incidence X-ray diffraction (GIXD) and specular X-ray reflectivity (XR). Both peptides exhibit similar structures in solution. In the buffer used for most of the experiments the main secondary structure elements are 22 % β-turn, 38 % β-sheet and 38 % random coil. The amphiphilic peptides are surface-active and form a Gibbs monolayer at the air-buffer interface. The surface activity is drastically increased by increasing the ionic strength of the subphase. The β-sheet layer is quite stable and can be compressed to higher surface pressures. This adsorption layer is very crystalline. Bragg peaks corresponding to an interstrand distance of 4.78 Å and to an end-to-end distance have been observed. This end-to-end distance can be connected with the observed differences in the layer thickness leading to the assumption that the peptides form a hairpin which is bended depending on the interactions with the counterions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adsorption
  • Air*
  • Amino Acid Sequence
  • Antimicrobial Cationic Peptides
  • Circular Dichroism
  • Helminth Proteins
  • Molecular Sequence Data
  • Osmolar Concentration
  • Peptides / chemistry*
  • Protein Structure, Secondary
  • Spectrophotometry, Infrared
  • Water / chemistry*
  • X-Ray Diffraction

Substances

  • Antimicrobial Cationic Peptides
  • Helminth Proteins
  • Peptides
  • arenicin-1, Arenicola marina
  • Water