Molecular structure, vibrational spectra and DFT molecular orbital calculations (TD-DFT and NMR) of the antiproliferative drug Methotrexate

Spectrochim Acta A Mol Biomol Spectrosc. 2010 Sep 15;77(1):264-75. doi: 10.1016/j.saa.2010.05.021. Epub 2010 May 24.

Abstract

The FT-IR and FT-Raman spectral studies of the Methotrexate (MTX) were carried out. The equilibrium geometry, various bonding features and harmonic vibrational frequencies of MTX have been investigated with the help of B3LYP density functional theory (DFT) using 6-31G(d) as basis set. Detailed analysis of the vibrational spectra has been made with the aid of theoretically predicted vibrational frequencies. The vibrational analysis confirms the differently acting ring modes, steric repulsion, conjugation and back-donation. The energy and oscillator strength calculated by Time-Dependent Density Functional Theory (TD-DFT) results complement with the experimental findings. The calculated HOMO and LUMO energies show that charge transfer occur within the molecule. Good correlations between the experimental (1)H and (13)C NMR chemical shifts in DMSO solution and calculated GIAO shielding tensors were found.

MeSH terms

  • Acids / chemistry
  • Cell Proliferation / drug effects
  • Dimerization
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy
  • Methotrexate / chemistry*
  • Methotrexate / pharmacology*
  • Models, Chemical*
  • Molecular Conformation
  • Pteridines / chemistry
  • Spectrophotometry, Ultraviolet
  • Spectroscopy, Fourier Transform Infrared
  • Spectrum Analysis, Raman*
  • Vibration*

Substances

  • Acids
  • Pteridines
  • Methotrexate