Analyzing shotgun proteomic data with PatternLab for proteomics

Curr Protoc Bioinformatics. 2010 Jun:Chapter 13:13.13.1-13.13.15. doi: 10.1002/0471250953.bi1313s30.

Abstract

PatternLab for proteomics is a one-stop shop computational environment for analyzing shotgun proteomic data. Its modules provide means to pinpoint proteins/peptides that are differentially expressed and those that are unique to a state. It can also cluster the ones that share similar expression profiles in time-course experiments, as well as help in interpreting results according to Gene Ontology. PatternLab is user-friendly, simple, and provides a graphical user interface.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cluster Analysis
  • Databases, Protein*
  • Guidelines as Topic
  • Proteins / metabolism
  • Proteomics / methods*
  • Sequence Homology, Amino Acid
  • Software*
  • User-Computer Interface

Substances

  • Proteins