Ultrafast energy exchange via water-phosphate interactions in hydrated DNA

J Phys Chem B. 2010 Jun 17;114(23):7951-7. doi: 10.1021/jp101174q.

Abstract

The ionic phosphate groups in the DNA backbone play a key role for DNA hydration. We study ultrafast vibrational dynamics and local interactions of phosphate groups and water by femtosecond two-color pump-probe spectroscopy. The asymmetric (PO(2))(-) stretching vibration nu(AS)(PO(2))(-) of artificial DNA oligomers containing 23 alternating adenine-thymine base pairs displays a lifetime of 340 fs, independent of the hydration level. For DNA at zero relative humidity, excess energy from the decay of the phosphate excitation is transferred within DNA on a 20 ps time scale. For fully hydrated DNA, the water shells around the phosphates serve as a primary heat sink accepting vibrational excess energy from DNA on a femtosecond time scale. OH stretching excitation of water molecules around fully hydrated DNA induces an ultrafast nu(AS)(PO(2))(-) response which includes rearrangements of the hydration shell and a reduction of the average number of phosphate-water hydrogen bonds.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Pairing
  • DNA / chemistry*
  • Energy Transfer
  • Hydrogen Bonding
  • Phosphates / chemistry*
  • Time Factors
  • Water / chemistry*

Substances

  • Phosphates
  • Water
  • DNA