Generation of a family-specific phage library of llama single chain antibody fragments that neutralize HIV-1

J Biol Chem. 2010 Jun 18;285(25):19116-24. doi: 10.1074/jbc.M110.116699. Epub 2010 Apr 16.

Abstract

Recently, we described llama antibody fragments (VHH) that can neutralize human immunodeficiency virus, type 1 (HIV-1). These VHH were obtained after selective elution of phages carrying an immune library raised against gp120 of HIV-1 subtype B/C CN54 with soluble CD4. We describe here a new, family-specific approach to obtain the largest possible diversity of related VHH that compete with soluble CD4 for binding to the HIV-1 envelope glycoprotein. The creation of this family-specific library of homologous VHH has enabled us to isolate phages carrying similar nucleotide sequences as the parental VHH. These VHH displayed varying binding affinities and neutralization phenotypes to a panel of different strains and subtypes of HIV-1. Sequence analysis of the homologs showed that the C-terminal three amino acids of the CDR3 loop were crucial in determining the specificity of these VHH for different subtype C HIV-1 strains. There was a positive correlation between affinity of VHH binding to gp120 of HIV-1 IIIB and the breadth of neutralization of diverse HIV-1 envelopes. The family-specific approach has therefore allowed us to better understand the interaction of the CD4-binding site antibodies with virus strain specificity and has potential use for the bioengineering of antibodies and HIV-1 vaccine development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AIDS Vaccines / chemistry
  • Antibodies / chemistry
  • Base Sequence
  • Binding Sites
  • CD4 Antigens / metabolism
  • HIV Envelope Protein gp120 / chemistry
  • HIV-1 / metabolism*
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Mutation
  • Peptide Library
  • Sequence Homology, Nucleic Acid
  • Single-Chain Antibodies / chemistry*

Substances

  • AIDS Vaccines
  • Antibodies
  • CD4 Antigens
  • HIV Envelope Protein gp120
  • Peptide Library
  • Single-Chain Antibodies