Fe-heme structure in Cu, Zn superoxide dismutase from Haemophilus ducreyi by X-ray absorption spectroscopy

Arch Biochem Biophys. 2010 Jun 1;498(1):43-9. doi: 10.1016/j.abb.2010.03.010. Epub 2010 Mar 25.

Abstract

We have carried out an X-ray Absorption Spectroscopy (XAS) study of ferric, ferrous, CO- and NO-bound Haemophilus ducreyi Cu,ZnSOD (HdSOD) in solution to investigate the structural modifications induced by the binding of small gaseous ligands to heme in this enzyme. The combined analysis of EXAFS and XANES data has allowed us to characterize the local structure around the Fe-heme with 0.02A accuracy, revealing a heterogeneity in the distances between iron and the two histidine ligands which was not evident in the X-ray crystal structure. In addition, we have shown that the metal oxidation state does not influence the Fe-heme coordination environment, whereas the presence of the CO and NO ligands induces local structural rearrangements in the enzyme which are very similar to those already observed in other hexa-coordinated heme proteins, such as neuroglobin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carbon Monoxide / chemistry
  • Carbon Monoxide / metabolism
  • Copper
  • Ferric Compounds / chemistry
  • Ferric Compounds / metabolism
  • Ferrous Compounds / chemistry
  • Ferrous Compounds / metabolism
  • Haemophilus ducreyi / enzymology*
  • Heme / chemistry*
  • Iron / chemistry*
  • Ligands
  • Models, Molecular
  • Nitric Oxide / chemistry
  • Nitric Oxide / metabolism
  • Protein Conformation
  • Superoxide Dismutase / chemistry*
  • Superoxide Dismutase / metabolism
  • X-Ray Absorption Spectroscopy*
  • Zinc

Substances

  • Ferric Compounds
  • Ferrous Compounds
  • Ligands
  • Nitric Oxide
  • Heme
  • Copper
  • Carbon Monoxide
  • Iron
  • Superoxide Dismutase
  • Zinc