Structure of the O-antigen and characterization of the O-antigen gene cluster of Escherichia coli O108 containing 5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-D-galacto-non-2-ulosonic (8-epilegionaminic) acid

Biochemistry (Mosc). 2010 Jan;75(1):19-24. doi: 10.1134/s0006297910010037.

Abstract

On mild acid degradation of the lipopolysaccharide of Escherichia coli O108, the O-polysaccharide was isolated and studied by sugar analysis and one- and two-dimensional 1H- and 13C-NMR spectroscopy. The polysaccharide was found to contain an unusual higher sugar, 5,7-diacetamido-3,5,7,9-tetradeoxy-l-glycero-d-galacto-non-2-ulosonic acid (di-N-acetyl-8-epilegionaminic acid, 8eLeg5Ac7Ac). The following structure of the tetrasaccharide repeating unit of the polysaccharide was established: -->4)-alpha-8eLegp5Ac7Ac-(2-->6)-alpha-D-Galp-(1-->3)-alpha-L-FucpNAc-(1-->3)-alpha-D-GlcpNAc-(1-->. Functions of the E. coli O108 antigen biosynthetic genes, including seven putative genes for synthesis of 8eLeg5Ac7Ac, were assigned by sequencing the O-antigen gene cluster along with comparison with gene databases and known biosynthetic pathways for related nonulosonic acids.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carbohydrate Sequence
  • Databases, Genetic
  • Escherichia coli / chemistry*
  • Escherichia coli / genetics
  • Genes, Bacterial
  • Magnetic Resonance Spectroscopy
  • Molecular Sequence Data
  • Multigene Family
  • O Antigens / chemistry*
  • O Antigens / isolation & purification
  • Sialic Acids / biosynthesis*
  • Sialic Acids / chemistry

Substances

  • O Antigens
  • Sialic Acids
  • 5,7-diacetamido-3,5,7,9-tetradeoxy-glycerogalacto-nonulosonic acid