Ancient machinery embedded in the contemporary ribosome

Biochem Soc Trans. 2010 Apr;38(2):422-7. doi: 10.1042/BST0380422.

Abstract

Structural analysis, supported by biochemical, mutagenesis and computational evidence, indicates that the peptidyltransferase centre of the contemporary ribosome is a universal symmetrical pocket composed solely of rRNA. This pocket seems to be a relic of the proto-ribosome, an ancient ribozyme, which was a dimeric RNA assembly formed from self-folded RNA chains of identical, similar or different sequences. This could have occurred spontaneously by gene duplication or gene fusion. This pocket-like entity was capable of autonomously catalysing various reactions, including peptide bond formation and non-coded or semi-coded amino acid polymerization. Efforts toward the structural definition of the early entity capable of genetic decoding involve the crystallization of the small ribosomal subunit of a bacterial organism harbouring a single functional rRNA operon.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Evolution, Molecular
  • Models, Biological
  • Models, Molecular
  • Nucleic Acid Conformation
  • Protein Binding
  • Protein Biosynthesis / physiology
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / genetics*
  • RNA, Catalytic / metabolism
  • RNA, Catalytic / physiology*
  • Ribosome Subunits, Large, Bacterial / chemistry
  • Ribosome Subunits, Large, Bacterial / metabolism
  • Ribosome Subunits, Small, Bacterial / chemistry
  • Ribosome Subunits, Small, Bacterial / metabolism
  • Ribosome Subunits, Small, Bacterial / ultrastructure
  • Ribosomes / genetics*
  • Ribosomes / metabolism
  • Ribosomes / physiology*

Substances

  • RNA, Catalytic