Fluorescence quenched quinone methide based activity probes--a cautionary tale

Org Biomol Chem. 2010 Apr 7;8(7):1610-8. doi: 10.1039/b920443a. Epub 2010 Feb 10.

Abstract

A carbamate linked quenching group coupled with a pro-quinone methide reactive core provides an effective tool for studying enzyme function without problems associated with background fluorescence from unreacted probe. However, the relatively slow fragmentation of the carbamate linkage in such a strategy may cause problems of loss of signal or a decoupling of enzyme activity and labelling.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis / enzymology*
  • Carbamates / chemistry*
  • Carboxylesterase / analysis*
  • Fluorescence
  • Fluorescent Dyes / chemistry*
  • Indolequinones / chemistry*
  • Models, Molecular
  • Molecular Sequence Data
  • Sequence Alignment

Substances

  • Carbamates
  • Fluorescent Dyes
  • Indolequinones
  • quinone methide
  • Carboxylesterase