Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.)

Mol Biol Rep. 2010 Dec;37(8):3991-4001. doi: 10.1007/s11033-010-0058-6. Epub 2010 Mar 16.

Abstract

The phytohormone auxin is important in various aspects of organism growth and development. Aux/IAA genes encoding short-lived nuclear proteins are responsive primarily to auxin induction. Despite their physiological importance, systematic analysis of Aux/IAA genes in maize have not yet been reported. In this paper, we presented the isolation and characterization of maize Aux/IAA genes in whole-genome scale. A total of 31 maize Aux/IAA genes (ZmIAA1 to ZmIAA31) were identified. ZmIAA genes are distributed in all the maize chromosomes except chromosome 2. Aux/IAA genes expand in the maize genome partly due to tandem and segmental duplication events. Multiple alignment and motif display results revealed major maize Aux/IAA proteins share all the four conserved domains. Phylogenetic analysis indicated Aux/IAA family can be divided into seven subfamilies. Putative cis-acting regulatory DNA elements involved in auxin response, light signaling transduction and abiotic stress adaption were observed in the promoters of ZmIAA genes. Expression data mining suggested maize Aux/IAA genes have temporal and spatial expression pattern. Collectively, these results will provide molecular insights into the auxin metabolism, transport and signaling research.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Chromosomes, Plant / genetics
  • Computational Biology
  • Gene Duplication / drug effects
  • Gene Expression Regulation, Plant / drug effects
  • Genes, Plant / genetics
  • Genome, Plant / drug effects
  • Genome, Plant / genetics*
  • Indoleacetic Acids / pharmacology*
  • Molecular Sequence Data
  • Multigene Family / genetics*
  • Phylogeny
  • Plant Proteins / chemistry
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Promoter Regions, Genetic / genetics
  • Zea mays / drug effects*
  • Zea mays / genetics*

Substances

  • Indoleacetic Acids
  • Plant Proteins