A novel family of plasmid-transferred anti-sense ncRNAs

RNA Biol. 2010 Mar-Apr;7(2):120-4. doi: 10.4161/rna.7.2.11184. Epub 2010 Mar 8.

Abstract

The genome of Xanthomonas campestris pv. vesicatoria encodes a constitutively expressed small RNA, which we designate PtaRNA1, "Plasmid transferred anti-sense RNA". It exhibits all hallmarks of a novel RNA antitoxin that proliferates by frequent horizontal transfer. It shows an erratic phylogenetic distribution with occurrences on chromosomes in a few individual strains distributed across both beta- and gamma-proteobacteria. Moreover, a homologous gene located on plasmid pMATVIM-7 of Pseudomonas aeruginosa is found. All ptaRNA1 homologs are located anti-sense to a putative toxin, which in turn is never encountered without the small RNA. The secondary structure of PtaRNA1, furthermore, is very similar to that of the FinP anti-sense RNA found on F-like plasmids in Escherichia coli.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Gene Expression Regulation, Bacterial
  • Genes, Bacterial / genetics
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phylogeny
  • Plasmids / genetics*
  • RNA, Antisense / chemistry
  • RNA, Antisense / genetics*
  • RNA, Ribosomal, 5S / chemistry
  • RNA, Ribosomal, 5S / genetics
  • RNA, Untranslated / chemistry
  • RNA, Untranslated / genetics*
  • Sequence Alignment
  • Xanthomonas campestris / genetics*
  • Xanthomonas campestris / growth & development

Substances

  • RNA, Antisense
  • RNA, Ribosomal, 5S
  • RNA, Untranslated