5'-UTR-based phylogenetic analysis of Classical swine fever virus isolates from India

Acta Virol. 2010;54(1):79-82. doi: 10.4149/av_2010_01_79.

Abstract

Classical swine fever (CSF) caused by Classical swine fever virus (CSFV) is a globally significant disease of pigs. Genetic typing of CSFV isolates can help in understanding the epidemiology of disease and trace down the source of outbreak. 5'-UTR sequence analysis and subsequent genetic classification of nine CSFV field isolates from India indicated that 3 isolates belonged to genotype 2.1 and were closely related to European CSFV strains. The remaining 6 isolates belonged to genotype 1 that contained old and new strains. However, the genotype 2.1 group consisted of recent field isolates only. The study showed circulation of both genotypes 1 and 2.1 in north-eastern part of India.

MeSH terms

  • 5' Untranslated Regions / genetics*
  • Animals
  • Classical Swine Fever / epidemiology
  • Classical Swine Fever / virology
  • Classical Swine Fever Virus / classification
  • Classical Swine Fever Virus / genetics*
  • Classical Swine Fever Virus / isolation & purification
  • DNA, Viral / analysis
  • Genotype
  • India / epidemiology
  • Molecular Sequence Data
  • Phylogeny*
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Swine / virology

Substances

  • 5' Untranslated Regions
  • DNA, Viral

Associated data

  • GENBANK/AJ605584
  • GENBANK/AJ605585
  • GENBANK/AJ605586
  • GENBANK/AJ605587
  • GENBANK/AJ605588
  • GENBANK/AJ605589
  • GENBANK/AJ605591
  • GENBANK/EU606028
  • GENBANK/EU606029
  • GENBANK/EU606030