Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog

Int J Syst Evol Microbiol. 2011 Jan;61(Pt 1):45-52. doi: 10.1099/ijs.0.021782-0. Epub 2010 Feb 12.

Abstract

A novel acidiphilic, hydrogenotrophic methanogen, designated strain 6A8(T), was isolated from an acidic (pH 4.0-4.5) and ombrotrophic (rain-fed) bog located near Ithaca, NY, USA. Cultures were dimorphic, containing thin rods (0.2-0.3 μm in diameter and 0.8-3.0 μm long) and irregular cocci (0.2-0.8 μm in diameter). The culture utilized H(2)/CO(2) to produce methane but did not utilize formate, acetate, methanol, ethanol, 2-propanol, butanol or trimethylamine. Optimal growth conditions were near pH 5.1 and 35 °C. The culture grew in basal medium containing as little as 0.43 mM Na(+) and growth was inhibited completely by 50 mM NaCl. To our knowledge, strain 6A8(T) is one of the most acidiphilic (lowest pH optimum) and salt-sensitive methanogens in pure culture. Acetate, coenzyme M, vitamins and yeast extract were required for growth. It is proposed that a new genus and species be established for this organism, Methanoregula boonei gen. nov., sp. nov. The type strain of Methanoregula boonei is 6A8(T) (=DSM 21154(T) =JCM 14090(T)).

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbon Dioxide / metabolism
  • Cluster Analysis
  • Culture Media / chemistry
  • DNA, Archaeal / chemistry
  • DNA, Archaeal / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Environmental Microbiology*
  • Hydrogen / metabolism
  • Hydrogen-Ion Concentration
  • Methane / metabolism
  • Methanomicrobiales / classification*
  • Methanomicrobiales / genetics
  • Methanomicrobiales / isolation & purification*
  • Methanomicrobiales / physiology
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride / metabolism
  • Soil
  • Temperature
  • United States
  • Wetlands

Substances

  • Culture Media
  • DNA, Archaeal
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Soil
  • Carbon Dioxide
  • Sodium Chloride
  • Hydrogen
  • Methane

Associated data

  • GENBANK/ABS55100
  • GENBANK/CP000780
  • GENBANK/DQ282124