Sphingobacterium bambusae sp. nov., isolated from soil of bamboo plantation

J Microbiol. 2009 Dec;47(6):693-8. doi: 10.1007/s12275-009-0296-2. Epub 2010 Feb 4.

Abstract

A Gram-negative, non-motile, non-spore-forming bacterial strain designated IBFC2009(T) was isolated from soil of a bamboo plantation. The strain could grow at 11 degrees C approximately 39 degrees C, pH 6.0-9.0, and in the presence of 0 approximately 5% NaCl. Based on 16S rRNA gene sequence analysis, Strain IBFC2009(T) belonged to the genus Sphingobacterium and showed the highest sequence similarity of 94.6% (S. composti T5-12(T)) with the type strains within the genus. The major fatty acids were summed feature 3 (iso-C(15:0) 2-OH and/or C(16:1) omega7c, 34.4%), iso-C(15:0) (22.4%), C(16:0) 3-OH (15.2%), and iso-C(17:0) 3-OH (12.8%). The G+C content of the genomic DNA was 41.0 mol%. According to the phenotypic and genotypic characteristics, Strain IBFC2009(T) should represent a novel species of the genus Sphingobacterium, for which the name Sphingobacterium bambusae sp. nov. is proposed. The type strain is IBFC2009(T) (=CCTCC AB 209162(T) =KCTC 22814(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride / metabolism
  • Soil Microbiology*
  • Sphingobacterium / classification*
  • Sphingobacterium / genetics
  • Sphingobacterium / isolation & purification*
  • Sphingobacterium / physiology
  • Temperature

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Sodium Chloride

Associated data

  • GENBANK/GQ339910