Metal templated design of protein interfaces

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1827-32. doi: 10.1073/pnas.0906852107. Epub 2009 Dec 23.

Abstract

Metal coordination is a key structural and functional component of a large fraction of proteins. Given this dual role we considered the possibility that metal coordination may have played a templating role in the early evolution of protein folds and complexes. We describe here a rational design approach, Metal Templated Interface Redesign (MeTIR), that mimics the time course of a hypothetical evolutionary pathway for the formation of stable protein assemblies through an initial metal coordination event. Using a folded monomeric protein, cytochrome cb(562), as a building block we show that its non-self-associating surface can be made self-associating through a minimal number of mutations that enable Zn coordination. The protein interfaces in the resulting Zn-directed, D(2)-symmetrical tetramer are subsequently redesigned, yielding unique protein architectures that self-assemble in the presence or absence of metals. Aside from its evolutionary implications, MeTIR provides a route to engineer de novo protein interfaces and metal coordination environments that can be tuned through the extensive noncovalent bonding interactions in these interfaces.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Biophysical Phenomena
  • Directed Molecular Evolution
  • Drug Design
  • Metals / chemistry*
  • Models, Molecular
  • Multiprotein Complexes
  • Protein Conformation
  • Protein Engineering / methods
  • Protein Interaction Domains and Motifs / genetics
  • Protein Multimerization
  • Protein Stability
  • Proteins / chemistry*
  • Proteins / genetics
  • Zinc / chemistry

Substances

  • Metals
  • Multiprotein Complexes
  • Proteins
  • Zinc

Associated data

  • PDB/3HNI
  • PDB/3HNJ
  • PDB/3HNK
  • PDB/3HNL