Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC?

J Biol. 2009;8(11):96. doi: 10.1186/jbiol207. Epub 2009 Dec 23.

Abstract

The role of genomic sequence in directing the packaging of eukaryotic genomes into chromatin has been the subject of considerable recent debate. A new paper from Tillo and Hughes shows that the intrinsic thermodynamic preference of a given sequence in the yeast genome for the histone octamer can largely be captured with a simple model, and in fact is mostly explained by %GC. Thus, the rules for predicting nucleosome occupancy from genomic sequence are much less complicated than has been claimed. See research article http://www.biomedcentral.com/1471-2105/10/442.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Base Composition / genetics
  • Base Sequence / genetics
  • Chromatin / genetics*
  • Computational Biology* / methods
  • CpG Islands / genetics
  • Cytosine Nucleotides / genetics
  • Guanine Nucleotides / genetics
  • Humans
  • Nucleosomes / genetics*
  • Predictive Value of Tests

Substances

  • Chromatin
  • Cytosine Nucleotides
  • Guanine Nucleotides
  • Nucleosomes