Dapdiamides, tripeptide antibiotics formed by unconventional amide ligases

J Nat Prod. 2010 Mar 26;73(3):441-6. doi: 10.1021/np900685z.

Abstract

Construction of a genomic DNA library from Pantoea agglomerans strain CU0119 and screening against the plant pathogen Erwinia amylovora yielded a new family of antibiotics, dapdiamides A-E (1-5). The structures were established through 2D-NMR experiments and mass spectrometry, as well as the synthesis of dapdiamide A (1). Transposon mutagenesis of the active cosmid allowed identification of the biosynthetic gene cluster. The dapdiamide family's promiscuous biosynthetic pathway contains two unconventional amide ligases that are predicted to couple its constituent monomers.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / biosynthesis*
  • Anti-Bacterial Agents / chemistry
  • Erwinia amylovora / genetics*
  • Erwinia amylovora / metabolism
  • Ligases / metabolism*
  • Molecular Structure
  • Multigene Family
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligopeptides / biosynthesis*
  • Oligopeptides / chemistry
  • Pantoea / genetics*
  • Pantoea / metabolism

Substances

  • Anti-Bacterial Agents
  • Oligopeptides
  • Ligases