Conformational flexibility of sigma(70) in anti-terminator loading

Mol Microbiol. 2010 Feb;75(3):543-6. doi: 10.1111/j.1365-2958.2009.07022.x. Epub 2009 Dec 16.

Abstract

In promoter DNA, the preferred distance of the -10 and -35 elements for interacting with RNA polymerase-bound sigma(70) is 17 bp. However, the Devi et al. paper in this issue of Molecular Microbiology demonstrates that when the C-terminal domain of sigma(70), including the 3.2 linker, is not attached to the core enzyme, distances between 0 and 3 bp can be accommodated. This attests to the great flexibility of the 3.2 linker. The particularly stable complex with the 2 bp separation may lend itself to structural studies of an early elongation complex containing sigma(70).

Publication types

  • Comment

MeSH terms

  • DNA / chemistry
  • DNA-Directed RNA Polymerases / chemistry*
  • DNA-Directed RNA Polymerases / metabolism
  • Promoter Regions, Genetic*
  • Protein Conformation
  • Protein Structure, Tertiary
  • Sigma Factor / chemistry*
  • Sigma Factor / metabolism
  • Viral Proteins / metabolism

Substances

  • Q protein, Bacteriophage lambda
  • Sigma Factor
  • Viral Proteins
  • DNA
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases