Abstract It is unknown why the influenza B virus causes less severe clinical signs than the influenza A virus in humans. Here we show that influenza B virus induces a lower levels of inflammatory cytokines in the lungs of infected ferrets, and causes less pathological damage to their lung tissues than does influenza A virus. The copy numbers of inflammatory cytokine genes, such as TNF-alpha and IFN-alpha, was significantly lower in the lungs of ferrets infected with influenza B virus than in those infected with influenza A virus. There were also significantly lower viral titers in the lungs of ferrets infected with the influenza B virus than with the influenza A virus. In addition, the duration of viral presence was shorter in the lungs of ferrets infected with influenza B virus than with influenza A virus. Taken together, our results suggest that the lower induction of inflammatory cytokines and lower viral titers in the lungs may be responsible for the milder clinical signs seen in ferrets or humans infected with influenza B virus.