Halosarcina limi sp. nov., a halophilic archaeon from a marine solar saltern, and emended description of the genus Halosarcina

Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2462-3466. doi: 10.1099/ijs.0.018697-0. Epub 2009 Nov 27.

Abstract

A halophilic archaeon, strain RO1-6(T), was isolated from a marine solar saltern in eastern China. Cells of strain RO1-6(T) were pleomorphic and motile and stained Gram-negative. Strain RO1-6(T) grew well on complex medium and colonies were red-pigmented. It was able to grow at 20-50°C (optimum 37°C), in 2.1-5.1M NaCl (optimum 3.9 M NaCl), in 0.05-0.70 M MgCl₂ (optimum 0.30 M MgCl₂) and at pH 6.5-8.0 (optimum pH 7.0). Cells lysed in distilled water and the minimal NaCl concentration to prevent cell lysis was 12 % (w/v). The major polar lipids of strain RO1-6(T) were phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester and two glycolipids that were chromatographically identical to S-DGD-1 and S₂-DGD. The 16S rRNA gene sequence of strain RO1-6(T) showed similarities of 96.9 and 96.4 % to those of the type strains of Halosarcina pallida and Halogeometricum borinquense, respectively, members of the most closely related recognized genera within the family Halobacteriaceae. The DNA G+C content of strain RO1-6(T) was 61.2 mol%. Phenotypic characterization and phylogenetic analysis revealed that strain RO1-6(T) is related to Halosarcina pallida and represents a novel species of the genus Halosarcina, for which the name Halosarcina limi sp. nov. is proposed; the type strain is RO1-6(T) (=CGMCC 1.8711(T) =JCM 16054(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • China
  • Cluster Analysis
  • DNA, Archaeal / chemistry
  • DNA, Archaeal / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Genes, rRNA
  • Geologic Sediments / microbiology*
  • Glycolipids / analysis
  • Halobacteriaceae / classification*
  • Halobacteriaceae / genetics
  • Halobacteriaceae / isolation & purification*
  • Halobacteriaceae / physiology
  • Hydrogen-Ion Concentration
  • Locomotion
  • Magnesium Chloride / metabolism
  • Molecular Sequence Data
  • Phospholipids / analysis
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • RNA, Archaeal / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Sodium Chloride / metabolism
  • Temperature

Substances

  • DNA, Archaeal
  • DNA, Ribosomal
  • Glycolipids
  • Phospholipids
  • Pigments, Biological
  • RNA, Archaeal
  • RNA, Ribosomal, 16S
  • Magnesium Chloride
  • Sodium Chloride

Associated data

  • GENBANK/EU931577