Diverse backbone-cyclized peptides via codon reprogramming

Nat Chem Biol. 2009 Dec;5(12):888-90. doi: 10.1038/nchembio.259. Epub 2009 Oct 25.

Abstract

We report a methodology for the ribosomal synthesis of backbone-cyclized peptides involving genetic code reprogramming to introduce one or more nonproteinogenic amino acids. Expression of linear peptides bearing a cysteine-proline dipeptide sequence followed by glycolic acid results in self-rearrangement to a C-terminal diketopiperadine-thioester, which non-enzymatically generates a cyclized peptide. We demonstrate the ribosomal synthesis of several naturally occurring backbone-cyclized peptides and a library based on a bicyclic scaffold, and we identify bioactive sequences by screening and deconvolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / genetics
  • Codon / genetics*
  • Molecular Sequence Data
  • Peptide Biosynthesis*
  • Peptide Library
  • Peptides, Cyclic / biosynthesis
  • Peptides, Cyclic / chemical synthesis*
  • Peptides, Cyclic / chemistry
  • Peptides, Cyclic / genetics
  • Protein Conformation
  • RNA, Messenger / genetics
  • RNA, Transfer / genetics
  • Recombination, Genetic
  • Ribosomes* / genetics
  • Ribosomes* / metabolism
  • Templates, Genetic

Substances

  • Amino Acids
  • Codon
  • Peptide Library
  • Peptides, Cyclic
  • RNA, Messenger
  • RNA, Transfer

Associated data

  • PubChem-Substance/85244535
  • PubChem-Substance/85244536
  • PubChem-Substance/85244537
  • PubChem-Substance/85244538
  • PubChem-Substance/85244539
  • PubChem-Substance/85244540
  • PubChem-Substance/85244541
  • PubChem-Substance/85244542
  • PubChem-Substance/85244543
  • PubChem-Substance/85244544
  • PubChem-Substance/85244545
  • PubChem-Substance/85244546
  • PubChem-Substance/85244547
  • PubChem-Substance/85244548
  • PubChem-Substance/85244549
  • PubChem-Substance/85244550
  • PubChem-Substance/85244551