Evolution at a high imposed mutation rate: adaptation obscures the load in phage T7

Genetics. 2010 Jan;184(1):221-32. doi: 10.1534/genetics.109.108803. Epub 2009 Oct 26.

Abstract

Evolution at high mutation rates is expected to reduce population fitness deterministically by the accumulation of deleterious mutations. A high enough rate should even cause extinction (lethal mutagenesis), a principle motivating the clinical use of mutagenic drugs to treat viral infections. The impact of a high mutation rate on long-term viral fitness was tested here. A large population of the DNA bacteriophage T7 was grown with a mutagen, producing a genomic rate of 4 nonlethal mutations per generation, two to three orders of magnitude above the baseline rate. Fitness-viral growth rate in the mutagenic environment-was predicted to decline substantially; after 200 generations, fitness had increased, rejecting the model. A high mutation load was nonetheless evident from (i) many low- to moderate-frequency mutations in the population (averaging 245 per genome) and (ii) an 80% drop in average burst size. Twenty-eight mutations reached high frequency and were thus presumably adaptive, clustered mostly in DNA metabolism genes, chiefly DNA polymerase. Yet blocking DNA polymerase evolution failed to yield a fitness decrease after 100 generations. Although mutagenic drugs have caused viral extinction in vitro under some conditions, this study is the first to match theory and fitness evolution at a high mutation rate. Failure of the theory challenges the quantitative basis of lethal mutagenesis and highlights the potential for adaptive evolution at high mutation rates.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adaptation, Biological / drug effects
  • Adaptation, Biological / genetics*
  • Bacteriophage T7 / drug effects
  • Bacteriophage T7 / genetics*
  • Bacteriophage T7 / growth & development
  • Bacteriophage T7 / physiology
  • DNA-Directed DNA Polymerase / genetics
  • Evolution, Molecular*
  • Genome, Viral / genetics
  • Mutagenesis / drug effects
  • Mutagenesis / genetics*
  • Mutagens / pharmacology
  • Mutation / genetics
  • Sequence Analysis, DNA

Substances

  • Mutagens
  • DNA-Directed DNA Polymerase