Thermodynamic analysis of substrate induced domain closure of 3-phosphoglycerate kinase

FEBS Lett. 2009 Nov 19;583(22):3660-4. doi: 10.1016/j.febslet.2009.10.048. Epub 2009 Oct 23.

Abstract

The energetic changes accompanying domain closure of 3-phosphoglycerate kinase, a typical hinge-bending enzyme, were assessed. Calorimetric titrations of the enzyme with each substrate, both in the absence and presence of the other one, provide information not only about the energetics of substrate binding, but of the associated conformational changes, including domain closure. Our results suggest that conformational rearrangements in the hinge generated by binding of both substrates provide the main driving force for domain closure overcoming the slightly unfavourable contact interactions between the domains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / chemistry
  • Adenosine Diphosphate / metabolism
  • Adenylyl Imidodiphosphate / chemistry
  • Adenylyl Imidodiphosphate / metabolism
  • Binding Sites
  • Glyceric Acids / chemistry
  • Glyceric Acids / metabolism
  • Humans
  • Kinetics
  • Mutagenesis, Site-Directed
  • Mutation
  • Phosphoglycerate Kinase / chemistry*
  • Phosphoglycerate Kinase / genetics
  • Phosphoglycerate Kinase / metabolism*
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Tertiary
  • Substrate Specificity
  • Thermodynamics*

Substances

  • Glyceric Acids
  • Adenylyl Imidodiphosphate
  • Adenosine Diphosphate
  • 3-phosphoglycerate
  • Phosphoglycerate Kinase