Monitoring gene expression of potato under salinity using cDNA microarrays

Plant Cell Rep. 2009 Dec;28(12):1799-816. doi: 10.1007/s00299-009-0780-5. Epub 2009 Oct 23.

Abstract

The molecular response to salt exposure was studied in the leaves of a Solanum tuberosum clone using cDNA microarray. Differentially expressed genes were classified according to their known or predicted function and their expression ratio as compared to the control. The major changes upon a 150 mM NaCl exposure in potato leaves occurred in the photosystem apparatus and Calvin cycle: many transcripts coding for proteins belonging to photosystems I and II and chlorophyll synthesis were repressed. On the other hand, we observed the induction of various kinds of transcription factors implicated in osmotic stress response via ABA-dependent or ABA-independent pathways but also in plant defense pathways. This revealed a crosstalk between abiotic and biotic stress responses during salt exposure, which activated several adaptation mechanisms including heat shock proteins, late embryogenesis abundant, dehydrins and PR proteins. Gene expression changes related to carbohydrate and amino acid metabolism were also observed, pointing at putative modifications at the metabolic level.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biological Transport / drug effects
  • Carbohydrates / pharmacology
  • Caseins / pharmacology
  • Down-Regulation / drug effects
  • Extracellular Space / drug effects
  • Extracellular Space / metabolism
  • Gene Expression Profiling*
  • Gene Expression Regulation, Plant* / drug effects
  • Genes, Plant / genetics
  • Intracellular Space / drug effects
  • Intracellular Space / metabolism
  • Lipids / pharmacology
  • Oligonucleotide Array Sequence Analysis*
  • Plant Proteins, Dietary / pharmacology
  • Salinity*
  • Sodium Chloride / pharmacology
  • Soil
  • Solanum tuberosum / cytology
  • Solanum tuberosum / drug effects
  • Solanum tuberosum / genetics*
  • Solanum tuberosum / metabolism
  • Up-Regulation / drug effects

Substances

  • Carbohydrates
  • Caseins
  • Lipids
  • Plant Proteins, Dietary
  • Soil
  • Osmolite
  • Sodium Chloride