DNA packaging by lambda-like bacteriophages: mutations broadening the packaging specificity of terminase, the lambda-packaging enzyme

Genetics. 2010 Jan;184(1):43-52. doi: 10.1534/genetics.109.108548. Epub 2009 Oct 19.

Abstract

The DNA-packaging specificities of phages lambda and 21 depend on the specific DNA interactions of the small terminase subunits, which have support helix-turn-recognition helix-wing DNA-binding motifs. lambda-Terminase with the recognition helix of 21 preferentially packages 21 DNA. This chimeric terminase's ability to package lambdaDNA is reduced approximately 20-fold. Phage lambda with the chimeric terminase is unable to form plaques, but pseudorevertants are readily obtained. Some pseudorevertants have trans-acting suppressors that change codons of the recognition helix. Some of these codons appear to remove an unfavorable base-pair contact; others appear to create a novel nonspecific DNA contact. Helper-packaging experiments show that these mutant terminases have lost the ability to discriminate between lambda and 21 during DNA packaging. Two cis-acting suppressors affect cosB, the small subunit's DNA-binding site. Each changes a cosB(lambda)-specific base pair to a cosB(21)-specific base pair. These cosB suppressors cause enhanced DNA packaging by 21-specific terminase and reduce packaging by lambda-terminase. Both the cognate support helix and turn are required for strong packaging discrimination. The wing does not contribute to cosB specificity. Evolution of packaging specificity is discussed, including a model in which lambda- and 21-packaging specificities diverged from a common ancestor phage with broad packaging specificity.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacteriophage lambda / enzymology*
  • Bacteriophage lambda / genetics*
  • Base Sequence
  • DNA Packaging*
  • DNA, Recombinant / genetics
  • DNA, Viral / genetics
  • DNA, Viral / metabolism*
  • Endodeoxyribonucleases / chemistry
  • Endodeoxyribonucleases / genetics*
  • Endodeoxyribonucleases / metabolism*
  • Genetic Engineering
  • Genotype
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation*
  • Protein Structure, Secondary
  • Protein Subunits / chemistry
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Species Specificity
  • Substrate Specificity
  • Suppression, Genetic

Substances

  • DNA, Recombinant
  • DNA, Viral
  • Protein Subunits
  • Recombinant Fusion Proteins
  • Endodeoxyribonucleases
  • terminase