Terpene-mediated interactions between transgenic or classically bred apple genotypes and associated insects were investigated. Apple genotypes were either resistant or susceptible to Venturia inaequalis that causes apple scab. They were subjected to infestation by Phyllonorycter leafminers and/or inoculation with V. inaequalis. Apple leaf extracts were analyzed by gas chromatography-mass spectrometry to quantify squalene, a triterpene known to mediate host location by Pholetesor parasitoids that are specialized on leafminers. Squalene contents in leafminer-infested leaves differed between the transgenic apple scab resistant line and a classically bred cultivar sharing the same resistance gene. This resistant cultivar showed an increase in squalene contents from healthy to leafminer-infested leaves. This was not the case in the transgenic resistant line. However, there was also no increase in the susceptible isogenic cultivar. Behavioral bioassays with parasitoid females also reflected these findings. Hence, alterations in leaf chemistry and corresponding responses of the parasitoid are apparent among classically bred cultivars, rather than in the genetically modified resistant line.