Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15702-7. doi: 10.1073/pnas.0908077106. Epub 2009 Aug 27.

Abstract

Determining the mechanism by which tRNAs rapidly and precisely transit through the ribosomal A, P, and E sites during translation remains a major goal in the study of protein synthesis. Here, we report the real-time dynamics of the L1 stalk, a structural element of the large ribosomal subunit that is implicated in directing tRNA movements during translation. Within pretranslocation ribosomal complexes, the L1 stalk exists in a dynamic equilibrium between open and closed conformations. Binding of elongation factor G (EF-G) shifts this equilibrium toward the closed conformation through one of at least two distinct kinetic mechanisms, where the identity of the P-site tRNA dictates the kinetic route that is taken. Within posttranslocation complexes, L1 stalk dynamics are dependent on the presence and identity of the E-site tRNA. Collectively, our data demonstrate that EF-G and the L1 stalk allosterically collaborate to direct tRNA translocation from the P to the E sites, and suggest a model for the release of E-site tRNA.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Allosteric Regulation
  • Allosteric Site
  • Biophysical Phenomena
  • Fluorescence Resonance Energy Transfer
  • Kinetics
  • Macromolecular Substances
  • Models, Molecular
  • Peptide Elongation Factor G / chemistry*
  • Peptide Elongation Factor G / metabolism*
  • Protein Biosynthesis
  • Protein Conformation
  • RNA, Transfer / chemistry
  • RNA, Transfer / genetics*
  • RNA, Transfer / metabolism*
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / metabolism*
  • Ribosomes / chemistry
  • Ribosomes / metabolism

Substances

  • Macromolecular Substances
  • Peptide Elongation Factor G
  • Ribosomal Proteins
  • ribosomal protein L1
  • RNA, Transfer