A promiscuous ribozyme promotes nucleotide synthesis in addition to ribose chemistry

Chem Biol. 2009 Aug 28;16(8):815-25. doi: 10.1016/j.chembiol.2009.07.005.

Abstract

Here we report the in vitro selection of an unusual ribozyme that efficiently performs nucleotide synthesis even though it was selected to perform a distinctly different sugar chemistry. This ribozyme, called pR1, when derivatized with ribose 5-phosphate (PR) at its 3' terminus and incubated with 6-thioguanine, produces two interconverting thiol-containing products corresponding to a Schiff base and its Amadori rearranged product. Consistent with this hypothesis, removing the 2-hydroxyl from the PR substrate results in only a single product. Surprisingly, as this was not selected for, switching the tethered PR substrate to 5-phosphoribosyl 1-pyrophosphate results in the synthesis of 6-thioguanosine 5'-monophosphate. The discovery that a ribozyme can promote such distinct reactions spontaneously demonstrates that an RNA-mediated metabolism early in evolution could have evolved important new functionalities via ribozyme promiscuity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Guanosine / analogs & derivatives*
  • Guanosine / chemistry
  • Kinetics
  • Molecular Sequence Data
  • Nucleotides / biosynthesis*
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / metabolism*
  • Ribosemonophosphates / chemistry*
  • Schiff Bases / chemistry
  • Sulfhydryl Compounds / chemistry
  • Thionucleosides / chemistry*

Substances

  • Nucleotides
  • RNA, Catalytic
  • Ribosemonophosphates
  • Schiff Bases
  • Sulfhydryl Compounds
  • Thionucleosides
  • Guanosine
  • ribose-5-phosphate
  • 6-thioguanosine

Associated data

  • GENBANK/EU267931