Coarse-grained modeling of allosteric regulation in protein receptors

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14253-8. doi: 10.1073/pnas.0901811106. Epub 2009 Aug 12.

Abstract

Allosteric regulation provides highly specific ligand recognition and signaling by transmembrane protein receptors. Unlike functions of protein molecular machines that rely on large-scale conformational transitions, signal transduction in receptors appears to be mediated by more subtle structural motions that are difficult to identify. We describe a theoretical model for allosteric regulation in receptors that addresses a fundamental riddle of signaling: What are the structural origins of the receptor agonism (specific signaling response to ligand binding)? The model suggests that different signaling pathways in bovine rhodopsin or human beta(2)-adrenergic receptor can be mediated by specific structural motions in the receptors. We discuss implications for understanding the receptor agonism, particularly the recently observed "biased agonism" (selected activation of specific signaling pathways), and for developing rational structure-based drug-design strategies.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adrenergic beta-2 Receptor Agonists
  • Adrenergic beta-Agonists / chemistry
  • Adrenergic beta-Agonists / metabolism
  • Adrenergic beta-Agonists / pharmacology
  • Algorithms
  • Allosteric Regulation
  • Animals
  • Binding Sites
  • Cattle
  • Humans
  • Ligands
  • Models, Molecular
  • Models, Theoretical*
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Receptors, Adrenergic, beta-2 / chemistry
  • Receptors, Adrenergic, beta-2 / metabolism*
  • Rhodopsin / agonists
  • Rhodopsin / chemistry
  • Rhodopsin / metabolism*
  • Signal Transduction

Substances

  • Adrenergic beta-2 Receptor Agonists
  • Adrenergic beta-Agonists
  • Ligands
  • Receptors, Adrenergic, beta-2
  • Rhodopsin