Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

Arch Virol. 2009;154(10):1679-84. doi: 10.1007/s00705-009-0480-z. Epub 2009 Aug 22.

Abstract

The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5'- and 3'-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • 5' Untranslated Regions / genetics
  • Base Sequence
  • Carmovirus / genetics*
  • Genome, Viral / genetics
  • Glycine max / virology*
  • Molecular Sequence Data
  • Mosaic Viruses / genetics
  • Phylogeny

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions

Associated data

  • GENBANK/FJ457015