2'-5'-Oligoadenylate synthetase is activated by a specific RNA sequence motif

Biochem Biophys Res Commun. 2009 Oct 16;388(2):317-22. doi: 10.1016/j.bbrc.2009.07.167. Epub 2009 Aug 5.

Abstract

2'-5'-Oligoadenylate synthetase plays a central role in the cellular innate antiviral response. Although activation of 2'-5'-oligoadenylate synthetase by double stranded RNA was discovered more than 30 years ago it is still unclear which sequence features are required by an RNA to activate the enzyme. A pool of chemically synthesized short double stranded RNAs of specific sequence was used to probe 2'-5'-oligoadenylate synthetase activation. It was found that activating double stranded RNAs contain the following motif: NNWWNNNNNNNNNWGN. Verification of this sequence motif in a pool of 102 small double stranded RNAs demonstrated a false positive prediction rate of 8% and a false negative prediction rate of 12%. The sequence motif identified provides mechanistic insight into the mechanism of 2'-5'-oligoadenylate synthetase activation by double stranded RNA and allows theoretical predictions whether a given RNA molecule has the capability to activate 2'-5'-oligoadenylate synthetase.

MeSH terms

  • 2',5'-Oligoadenylate Synthetase / metabolism*
  • Base Sequence
  • Cell Line, Tumor
  • Humans
  • Nucleic Acid Conformation
  • RNA, Double-Stranded / chemistry
  • RNA, Double-Stranded / metabolism*
  • Sequence Analysis, RNA

Substances

  • RNA, Double-Stranded
  • OAS1 protein, human
  • 2',5'-Oligoadenylate Synthetase