The presence of toxigenic blooms dominated by filamentous cyanobacterium Planktothrix agardhii with estimation of microcystins (MCs) concentration and toxicity was measured in two lakes: Bytynskie and Lubosinskie situated in Western Poland. Investigations were carried out in summer, autumn, and winter of 2007/2008 and early spring of 2008. In both lakes, a domination of P. agardhii in relation to the total cyanobacterial biomass oscillated, throughout the year, almost on the same level between 75 and 99%. The PCR analysis of mcyE gene indicated a presence of toxigenic strains in all collected samples. In addition, the result of semiquantification of mcyE gene band showed that both lakes seem to have variable, throughout the seasons, toxigenic potential with the highest density of mcyE gene in spring. Two separate methods were used: protein phosphatase inhibition assay for estimation of MCs toxicity (biological activity) and high-performance liquid chromatography for determination of MCs concentration (quantity). The highest seasonal MCs toxicity (15.8 μg/L Bytynskie and 21.9 μg/L Lubosinskie) and concentration (34.6 μg/L Bytynskie and 52.2 μg/L Lubosinskie) were determined in autumn and indicated on a Second Alert Level, according to WHO guidelines for bathing water. The results showed the ability of toxigenic strains of cyanobacteria dominated by P. agardhii to remain and produce MCs during the whole year. This was confirmed by significant correlations between P. agardhii biomass and MCs concentrations in both lakes (r = 0.84, Bninskie and r = 0.79, Lubosinskie; P < 0.05).
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