Detection of the rtA181V/T and rtN236T mutations associated with resistance to adefovir dipivoxil using a ligase detection reaction assay

Clin Chim Acta. 2009 Oct;408(1-2):70-4. doi: 10.1016/j.cca.2009.07.016. Epub 2009 Aug 3.

Abstract

Background: Adefovir dipivoxil (ADV) is effective for treatment of chronic hepatitis B virus (HBV) infection, but long-time ADV therapy leads to drug resistance because of HBV reverse transcriptase mutations. We developed a sensitive and specific method for detecting the rtA181V/T and rtN236T mutations associated with ADV resistance in chronic hepatitis B patients, based on a ligase detection reaction (LDR).

Methods: HBV templates were amplified by polymerase chain reaction (PCR), followed by LDR and electrophoresis on a sequencer. The assay was evaluated using 165 serum samples, and plasmid controls.

Results: In a mixture of wild-type and mutant plasmids, the assay could detect mutant plasmid at 1%. Complete concordance between the PCR-LDR assay and sequencing analysis was observed for 141 of 148 samples (95.3%) at codon 181, and 143 of 148 samples (96.6%) at codon 236. Discordant results were confirmed to be consistent with the PCR-LDR assay by subclone sequencing. Seventeen samples could not be detected by both of the methods due to low HBV DNA levels.

Conclusions: The PCR-LDR assay can sensitively and specifically detect the rtA181V/T and rtN236T mutations, and may be used for monitoring ADV resistance in patients infected with HBV.

MeSH terms

  • Adenine / analogs & derivatives*
  • Adenine / pharmacology
  • Adenine / therapeutic use
  • Antiviral Agents / pharmacology*
  • Antiviral Agents / therapeutic use
  • Drug Resistance, Viral / genetics*
  • Hepatitis B / drug therapy
  • Hepatitis B virus / drug effects
  • Hepatitis B virus / enzymology
  • Hepatitis B virus / genetics
  • Humans
  • Ligases / metabolism*
  • Mutation*
  • Organophosphonates / pharmacology*
  • Organophosphonates / therapeutic use
  • Plasmids / genetics
  • RNA-Directed DNA Polymerase / genetics*

Substances

  • Antiviral Agents
  • Organophosphonates
  • RNA-Directed DNA Polymerase
  • Ligases
  • Adenine
  • adefovir dipivoxil