Functional analysis of 5' untranslated region of a TIR-NBS-encoding gene from triploid white poplar

Mol Genet Genomics. 2009 Oct;282(4):381-94. doi: 10.1007/s00438-009-0471-5. Epub 2009 Jul 19.

Abstract

Genome-wide analyses have identified a set of TIR-NBS-encoding genes in plants. However, the molecular mechanism underlying the expression of these genes is still unknown. In this study, we presented a TIR-NBS-encoding gene, PtDrl02, that displayed a low level of tissue-specific expression in a triploid white poplar [(Populus tomentosa x P. bolleana) x P. tomentosa], and analyzed the effects of the 5' untranslated region (UTR) on gene expression. The 5' UTR sequence repressed the reporter activity of beta-glucuronidase (GUS) gene under PtDrl02 promoter by 113.5-fold with a staining ratio of 2.97% in the transgenic tobacco plants. Quantitative RT-PCR assays revealed that the 5' UTR sequence decreased the transcript level of the GUS reporter gene by 13.3-fold, implying a regulatory role of 5' UTR in transcription and/or mRNA destabilization. The comparison of GUS activity with the transcript abundance indicated that the 5' UTR sequence decreased the translation efficiency of target gene by 88.3%. Additionally, the analysis of the transgenic P-985/UTRDelta/GUS plants showed that both the exon1 sequence and the leading intron within the 5' UTR region were responsible for the regulation of gene expression. Our results suggested a negative effect of the 5' UTR of PtDrl02 gene on gene expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics*
  • 5' Untranslated Regions / physiology
  • Amino Acid Sequence
  • Cells, Cultured
  • Gene Expression Regulation, Plant
  • Genes, Plant / physiology*
  • Glucuronidase / genetics
  • Molecular Sequence Data
  • Nicotiana / cytology
  • Nicotiana / genetics
  • Nucleic Acid Conformation
  • Plant Proteins / chemistry
  • Plant Proteins / genetics
  • Plants, Genetically Modified / genetics
  • Polyploidy*
  • Populus / genetics*
  • Protein Structure, Tertiary / genetics
  • Rhizobium / cytology
  • Rhizobium / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Transfection

Substances

  • 5' Untranslated Regions
  • Plant Proteins
  • Glucuronidase

Associated data

  • GENBANK/DQ324361
  • GENBANK/EF424611