Phylogenetic analysis and characterization of Korean bovine viral diarrhea viruses

Vet Microbiol. 2009 Nov 18;139(3-4):356-60. doi: 10.1016/j.vetmic.2009.06.017. Epub 2009 Jun 21.

Abstract

Thirty-six bovine viral disease viruses (BVDVs) were identified in bovine feces (n=16), brains (n=2), and aborted fetuses (n=18) in Korea. To reveal the genetic diversity and characteristics of these Korean strains, the sequences of their 5'-untranslated regions (5'-UTRs) were determined and then compared with published reference sequences. Neighbor-joining phylogenetic analysis revealed that most of the Korean viruses were of the BVDV subtypes 1a (n=17) or 2a (n=17). The remaining strains were of subtypes 1b (n=1) and 1n (n=1). This analysis indicates that the 1a and 2a BVDV subtypes are predominant and widespread in Korea. In addition, the prevalence of BVDV-2 was markedly higher in aborted fetuses than in other samples and was more often associated with reproductive problems and significant mortality in cattle.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions
  • Animals
  • Bovine Virus Diarrhea-Mucosal Disease / epidemiology
  • Bovine Virus Diarrhea-Mucosal Disease / genetics
  • Bovine Virus Diarrhea-Mucosal Disease / virology
  • Cattle
  • DNA, Viral / genetics
  • Diarrhea Virus 1, Bovine Viral / classification*
  • Diarrhea Virus 2, Bovine Viral / classification*
  • Diarrhea Virus 2, Bovine Viral / genetics
  • Genetic Variation
  • Korea / epidemiology
  • Phylogeny*
  • Reverse Transcriptase Polymerase Chain Reaction / veterinary

Substances

  • 5' Untranslated Regions
  • DNA, Viral